Browsing (Epi)genomes: a guide to data resources and epigenome browsers for stem cell researchers.

Cell Stem Cell
Authors
Keywords
Abstract

Over the past years we have witnessed an explosion in the generation of freely available genome-wide data sets, including maps of various histone modifications, transcription factor binding, DNase hypersensitivity, and DNA methylation, which provide valuable resources for data validation, exploration, and hypothesis generation. The goal of this review is to provide the reader with information on where to find many of the data sets and how to utilize the various (epi)genome browsers for display and initial analysis. We provide selected examples to highlight key features and demonstrate the application of these browsers to stem cell biology.

Year of Publication
2013
Journal
Cell Stem Cell
Volume
13
Issue
1
Pages
14-21
Date Published
2013 Jul 03
ISSN
1875-9777
URL
DOI
10.1016/j.stem.2013.06.006
PubMed ID
23827707
PubMed Central ID
PMC3750740
Links
Grant list
P01 GM099117 / GM / NIGMS NIH HHS / United States
U01 ES017155 / ES / NIEHS NIH HHS / United States
P01GM099117 / GM / NIGMS NIH HHS / United States
U01ES017155 / ES / NIEHS NIH HHS / United States