PyBamView: a browser-based application for viewing short read alignments.

Bioinformatics
Authors
Keywords
Abstract

UNLABELLED: Current sequence alignment browsers allow visualization of large and complex next-generation sequencing datasets. However, most of these tools provide inadequate display of insertions and can be cumbersome to use on large datasets. I implemented PyBamView, a lightweight Web application for visualizing short read alignments. It provides an easy-to-use Web interface for viewing alignments across multiple samples, with a focus on accurate visualization of insertions.

AVAILABILITY AND IMPLEMENTATION: PyBamView is available as a standard python package. The source code is freely available under the MIT license at https://mgymrek.github.io/pybamview.

Year of Publication
2014
Journal
Bioinformatics
Volume
30
Issue
23
Pages
3405-7
Date Published
2014 Dec 01
ISSN
1367-4811
URL
DOI
10.1093/bioinformatics/btu565
PubMed ID
25147359
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